ConSpeciFix    

Classify bacterial and archaeal species based on gene flow

Bobay & Ochman, Genome Biol Evol, 2017

Web server:   http://www.conspecifix.com

GitHub:  https://github.com/Bobay-Ochman/ConSpeciFix

CoreSimul    

CoreSimul: a forward-in-time simulator of genome evolution for prokaryotes modeling homologous recombination

Bobay, BMC Bioinformatics, 2020

GitHub: https://github.com/lbobay/CoreSimul

CoreCruncher

Efficient inference of core genomes

for large prokaryotic datasets

Submitted

GitHub: https://github.com/lbobay/CoreCruncher

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